SNP Profiles of SPA 9 [COL] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
1._SPA_9_[COL]	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
2._GC-01-099-5-16	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
3._GC-01-099-5-16	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
4._GC-01-099-5-16	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
5._GC-01-099-5-16	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
6._GC-01-099-5-16	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
7._GC-01-099-5-16	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
8._SPA_9_[COL]	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
9._SPA_9_[COL]	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
10._SPA_9_[COL]	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
11._SPA_9_[COL]	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
12._GC-01-099-5-16	CG	AT	AC	GT	_	AC	CC	AG	CT	AA	GG	AG	AC	CT
13._GC-01-099-5-16	CG	AT	AC	GT	_	AC	CC	AG	CT	AA	GG	AG	AC	CT
14._SPA_9_[COL]	CG	AT	AC	GT	_	AC	CC	AG	CT	AA	GG	AG	AC	CT
15._SPA_9_[COL]	CG	AT	AC	GT	_	AC	CC	AG	CT	AA	GG	AG	AC	CT
16._RUQ_235	CG	AT	AC	GT	CT	AC	CC	AG	CT	AA	GG	AG	AC	CT
17._RUQ_235	_	_	CC	-	TT	-	CC	-	CT	-	_	AG	AC	-
18._SPA_9_[COL]	GG	TT	AC	GG	CT	AC	CG	AA	CT	AA	GG	AA	CC	TT
19._RUQ_235	CG	AT	_	AC	AG	AC	GG	AG	AG	AA	GG	_	AC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
1._SPA_9_[COL]	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
2._GC-01-099-5-16	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
3._GC-01-099-5-16	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
4._GC-01-099-5-16	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
5._GC-01-099-5-16	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
6._GC-01-099-5-16	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
7._GC-01-099-5-16	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
8._SPA_9_[COL]	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
9._SPA_9_[COL]	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
10._SPA_9_[COL]	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
11._SPA_9_[COL]	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
12._GC-01-099-5-16	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
13._GC-01-099-5-16	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
14._SPA_9_[COL]	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
15._SPA_9_[COL]	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
16._RUQ_235	GT	CG	CC	TT	AA	GG	CG	CT	CT	CG	AT	CT	AA	CT
17._RUQ_235	GT	CG	-	TT	_	GG	CG	-	_	_	_	_	AA	-
18._SPA_9_[COL]	GG	GG	AA	CC	AA	GG	CG	CC	CC	GG	AA	TT	AG	CC
19._RUQ_235	AC	CG	CC	AA	_	CC	CG	AG	AG	CG	AT	AG	AA	AG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
1._SPA_9_[COL]	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
2._GC-01-099-5-16	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
3._GC-01-099-5-16	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
4._GC-01-099-5-16	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
5._GC-01-099-5-16	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
6._GC-01-099-5-16	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
7._GC-01-099-5-16	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
8._SPA_9_[COL]	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
9._SPA_9_[COL]	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
10._SPA_9_[COL]	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
11._SPA_9_[COL]	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
12._GC-01-099-5-16	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
13._GC-01-099-5-16	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
14._SPA_9_[COL]	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
15._SPA_9_[COL]	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AA	CT	X_X	X_X
16._RUQ_235	AG	AA	CT	CT	GT	CT	AC	CT	TT	CC	AG	CT	X_X	X_X
17._RUQ_235	_	_	_	_	GT	_	_	_	TT	CC	AA	_	X_X	X_X
18._SPA_9_[COL]	GG	AA	CC	CC	GT	TT	AC	TT	TT	CG	AA	CC	X_X	X_X
19._RUQ_235	AG	AA	_	_	AC	AG	AC	AG	AA	GG	AA	AG	X_X	X_X

Input profile: SPA_9_[COL]

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Mars Center for Cocoa Science, Brazil

Location: 1516 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._SPA_9_[COL]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 6 > FP

Dapeng Zhang, 2016

2._SPA_9_[COL] GC-01-099-5-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14 > FP3

3._SPA_9_[COL] GC-01-099-5-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

4._SPA_9_[COL] GC-01-099-5-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._SPA_9_[COL] GC-01-099-5-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._SPA_9_[COL] GC-01-099-5-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._SPA_9_[COL] GC-01-099-5-16

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._SPA_9_[COL]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 14 > F

Dapeng Zhang, 2016

9._SPA_9_[COL]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 1 > FP

Dapeng Zhang, 2016

10._SPA_9_[COL]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 5

Dapeng Zhang, 2016

11._SPA_9_[COL]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 3

Dapeng Zhang, 2016

12._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

13._SPA_9_[COL] GC-01-099-5-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 9 > FP

Dapeng Zhang, 2016

15._SPA_9_[COL]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1516 4

Dapeng Zhang, 2016

16._SPA_9_[COL] RUQ_235

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._SPA_9_[COL] RUQ_235

93.8 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._SPA_9_[COL]

65 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

19._SPA_9_[COL] RUQ_235

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520